SNP Report

Basic Infomation

Name	rs10878224 dbSNP
Location	chr:12,40614601
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1031996	0.89[CHB][hapmap]
rs10748014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784381	0.89[CHB][hapmap]
rs10784386	0.89[CHB][hapmap]
rs10878222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11175326	0.89[CHB][hapmap]
rs11175656	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1352876	0.89[CHB][hapmap]
rs1463719	0.84[CHB][hapmap]
rs1472118	0.84[CHB][hapmap]
rs1491931	0.89[CHB][hapmap]
rs1602578	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844921	0.86[ASN][1000 genomes]
rs2131082	0.82[ASN][1000 genomes]
rs2131083	0.82[ASN][1000 genomes]
rs2638245	0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2638254	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs2638260	0.89[CHB][hapmap]
rs2638263	0.89[CHB][hapmap]
rs2638264	0.84[CHB][hapmap]
rs2638266	0.89[CHB][hapmap]
rs2708470	0.82[ASN][1000 genomes]
rs2708472	0.82[ASN][1000 genomes]
rs2708473	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2708476	0.84[ASN][1000 genomes]
rs2708480	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs2708494	0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4360759	0.84[CHB][hapmap]
rs716231	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7306140	0.84[CHB][hapmap]
rs878010	0.84[CHB][hapmap]
rs900253	0.84[CHB][hapmap]
rs937109	0.89[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)