SNP Report
Basic Infomation
| Name | rs12904969 dbSNP |
|---|---|
| Location | chr:15,67303987 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12899234 | 0.90[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12900811 | 0.90[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12900849 | 0.90[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs12904545 | 0.81[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs171957 | 0.91[ASN][1000 genomes] |
| rs17210752 | 0.87[EUR][1000 genomes] |
| rs17276559 | 0.87[EUR][1000 genomes] |
| rs17276587 | 0.87[EUR][1000 genomes] |
| rs2414929 | 0.87[EUR][1000 genomes] |
| rs2414930 | 0.87[EUR][1000 genomes] |
| rs266274 | 1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs34747049 | 0.86[EUR][1000 genomes] |
| rs35320424 | 0.87[EUR][1000 genomes] |
| rs35903063 | 0.87[EUR][1000 genomes] |
| rs4402503 | 0.87[EUR][1000 genomes] |
| rs62007974 | 0.87[EUR][1000 genomes] |
| rs8038265 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SMAD3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SLC13A2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014