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rVarBase
SNP Report
Basic Infomation
Name
rs12742181  
dbSNP
Location
chr:1,155116151
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12726330
1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34195153
1.00[AMR][1000 genomes]
rs35682329
0.95[EUR][1000 genomes]
rs35749011
0.84[EUR][1000 genomes]
rs71628639
1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
DPM3
Proximal transcriptional regulation
HMGN2P18
Proximal transcriptional regulation
EFNA1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)