SNP Report
Basic Infomation
| Name | rs12729486 dbSNP |
|---|---|
| Location | chr:1,154827366 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11586348 | 1.00[JPT][hapmap] |
| rs12058931 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12084791 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12089942 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128882 | 1.00[JPT][hapmap] |
| rs1218566 | 1.00[JPT][hapmap] |
| rs13376333 | 1.00[JPT][hapmap] |
| rs34245846 | 0.85[ASN][1000 genomes] |
| rs4492614 | 1.00[CHB][hapmap] |
| rs56382016 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6426985 | 1.00[JPT][hapmap] |
| rs6426987 | 1.00[JPT][hapmap] |
| rs6426988 | 1.00[JPT][hapmap] |
| rs6666258 | 1.00[JPT][hapmap] |
| rs6666891 | 1.00[JPT][hapmap] |
| rs6704449 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNN3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014