SNP Report
Basic Infomation
| Name | rs12618283 dbSNP |
|---|---|
| Location | chr:2,65382039 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496122 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10519011 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11126030 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12172885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12611491 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12617149 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12619806 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12623206 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13012648 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17040051 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1961243 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2227268 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2241140 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2241158 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3732098 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61758848 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs950736 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200654 | Proximal transcriptional regulation |
| ENSG00000200654 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014