SNP Report
Basic Infomation
| Name | rs12324504 dbSNP |
|---|---|
| Location | chr:15,91144697 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10438437 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12903655 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12904055 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34358242 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34759713 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4244880 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4244882 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4454949 | 0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4609824 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4609825 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4932175 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4932356 | 0.91[ASN][1000 genomes] |
| rs4932359 | 0.84[ASN][1000 genomes] |
| rs71407313 | 0.98[ASN][1000 genomes] |
| rs7163189 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7174232 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7175560 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7176303 | 0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9652517 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9652518 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| ENSG00000259314 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014