SNP Report
Basic Infomation
| Name | rs12287523 dbSNP |
|---|---|
| Location | chr:11,61275684 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230682 | 1.00[AMR][1000 genomes] |
| rs11230693 | 1.00[AMR][1000 genomes] |
| rs11230706 | 1.00[AMR][1000 genomes] |
| rs11230707 | 1.00[AMR][1000 genomes] |
| rs11230712 | 1.00[ASW][hapmap];0.87[LWK][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11230713 | 0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12269961 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12276733 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12277311 | 1.00[AMR][1000 genomes] |
| rs12280954 | 0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12283292 | 1.00[ASW][hapmap];0.83[LWK][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12288445 | 0.87[ASW][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap] |
| rs12289629 | 1.00[AMR][1000 genomes] |
| rs12295977 | 1.00[AMR][1000 genomes] |
| rs17156101 | 0.81[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs56075740 | 1.00[AMR][1000 genomes] |
| rs57991692 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58091965 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59182050 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7110415 | 0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7118276 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7126797 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9651727 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRC10B | Proximal transcriptional regulation |
| MIR4488 | Proximal transcriptional regulation |
| RNU2-4P | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| SYT7 | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| PRKCZ | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014