SNP Report
Basic Infomation
| Name | rs11230707 dbSNP |
|---|---|
| Location | chr:11,61253841 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230682 | 1.00[AMR][1000 genomes] |
| rs11230693 | 1.00[AMR][1000 genomes] |
| rs11230706 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230710 | 1.00[EUR][1000 genomes] |
| rs11230712 | 1.00[AMR][1000 genomes] |
| rs11230713 | 1.00[AMR][1000 genomes] |
| rs12269961 | 1.00[AMR][1000 genomes] |
| rs12276733 | 1.00[AMR][1000 genomes] |
| rs12277311 | 1.00[AMR][1000 genomes] |
| rs12280954 | 1.00[AMR][1000 genomes] |
| rs12283292 | 0.81[LWK][hapmap];1.00[AMR][1000 genomes] |
| rs12287523 | 1.00[AMR][1000 genomes] |
| rs12289629 | 1.00[AMR][1000 genomes] |
| rs12290293 | 1.00[EUR][1000 genomes] |
| rs12295977 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17156016 | 1.00[GIH][hapmap] |
| rs17156095 | 1.00[EUR][1000 genomes] |
| rs56075740 | 1.00[AMR][1000 genomes] |
| rs57991692 | 1.00[AMR][1000 genomes] |
| rs58091965 | 1.00[AMR][1000 genomes] |
| rs59182050 | 1.00[AMR][1000 genomes] |
| rs7110415 | 1.00[AMR][1000 genomes] |
| rs7118276 | 1.00[AMR][1000 genomes] |
| rs7126797 | 1.00[AMR][1000 genomes] |
| rs9651727 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Proximal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| RPLP0P2 | Distal transcriptional regulation |
| PPP1R32 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014