SNP Report
Basic Infomation
| Name | rs12284488 dbSNP |
|---|---|
| Location | chr:11,61157056 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10466667 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10897159 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230682 | 1.00[EUR][1000 genomes] |
| rs11230687 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230693 | 1.00[EUR][1000 genomes] |
| rs11821976 | 1.00[EUR][1000 genomes] |
| rs11823506 | 1.00[EUR][1000 genomes] |
| rs11825035 | 1.00[EUR][1000 genomes] |
| rs11826036 | 1.00[EUR][1000 genomes] |
| rs11826324 | 1.00[EUR][1000 genomes] |
| rs11827146 | 1.00[EUR][1000 genomes] |
| rs11827662 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12289584 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12289629 | 1.00[EUR][1000 genomes] |
| rs12292764 | 1.00[EUR][1000 genomes] |
| rs12294238 | 0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17156016 | 0.83[LWK][hapmap];0.87[AMR][1000 genomes] |
| rs2232144 | 1.00[EUR][1000 genomes] |
| rs28720259 | 1.00[EUR][1000 genomes] |
| rs28720330 | 1.00[EUR][1000 genomes] |
| rs55741058 | 1.00[EUR][1000 genomes] |
| rs56075740 | 1.00[EUR][1000 genomes] |
| rs59291208 | 1.00[EUR][1000 genomes] |
| rs59912257 | 1.00[EUR][1000 genomes] |
| rs61746696 | 1.00[EUR][1000 genomes] |
| rs7107543 | 0.92[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7130418 | 1.00[EUR][1000 genomes] |
| rs73496205 | 1.00[EUR][1000 genomes] |
| rs9651727 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM216 | Proximal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| CYBASC3 | Distal transcriptional regulation |
| TMEM138 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014