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rVarBase
SNP Report
Basic Infomation
Name
rs12256689  
dbSNP
Location
chr:10,81685656
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11199104
1.00[ASN][1000 genomes]
rs12241521
0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254111
0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12262739
1.00[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269573
0.88[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2983794
1.00[ASN][1000 genomes]
rs3012911
1.00[ASN][1000 genomes]
rs60600341
0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61861443
1.00[ASN][1000 genomes]
rs7902160
1.00[CEU][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911085
1.00[CEU][hapmap]
rSNP related genes
Symbol
Regulation type
MBL1P
Distal transcriptional regulation
MBL1P
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
AMICA1
SCAN