SNP Report

Basic Infomation

Name	rs12226283 dbSNP
Location	chr:11,64751140
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10792454	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11231912	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1152642	0.86[ASN][1000 genomes]
rs1196617	0.94[ASN][1000 genomes]
rs1196618	0.94[ASN][1000 genomes]
rs1196903	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183578	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs183579	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs240568	0.83[ASN][1000 genomes]
rs240569	0.87[ASN][1000 genomes]
rs240570	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2670909	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs471772	0.90[ASN][1000 genomes]
rs495330	0.86[ASN][1000 genomes]
rs528941	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs532508	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs551292	0.92[ASN][1000 genomes]
rs57751380	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs582378	0.90[ASN][1000 genomes]
rs582580	0.91[ASN][1000 genomes]
rs586616	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs587835	0.85[ASN][1000 genomes]
rs589351	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs596321	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs600868	0.90[ASN][1000 genomes]
rs602404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs610208	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs615502	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs615709	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs616124	0.86[ASN][1000 genomes]
rs616341	0.87[ASN][1000 genomes]
rs631012	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs654772	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs660165	0.90[ASN][1000 genomes]
rs664226	0.90[ASN][1000 genomes]
rs674981	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs694907	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ATG2A	Distal transcriptional regulation
PPP2R5B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)