SNP Report
Basic Infomation
| Name | rs11830479 dbSNP |
|---|---|
| Location | chr:12,48898823 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168601 | 0.82[AFR][1000 genomes] |
| rs11612896 | 0.91[YRI][hapmap] |
| rs11829869 | 0.91[YRI][hapmap] |
| rs11832311 | 0.91[YRI][hapmap] |
| rs11836834 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17123105 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs17123106 | 0.82[AFR][1000 genomes] |
| rs17123108 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs17123135 | 0.83[AMR][1000 genomes] |
| rs2068293 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs2705133 | 0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2705161 | 0.88[ASN][1000 genomes] |
| rs4146339 | 0.83[YRI][hapmap] |
| rs4237857 | 0.91[YRI][hapmap] |
| rs4265629 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs4344535 | 1.00[YRI][hapmap] |
| rs4500527 | 0.91[YRI][hapmap] |
| rs4620769 | 1.00[YRI][hapmap] |
| rs4760712 | 0.91[YRI][hapmap] |
| rs57022528 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs60756250 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7956679 | 0.91[YRI][hapmap] |
| rs7966826 | 0.91[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Proximal transcriptional regulation |
| ENSG00000258121 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014