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rVarBase
SNP Report
Basic Infomation
Name
rs11804831  
dbSNP
Location
chr:1,1194804
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11466687
1.00[CHD][hapmap]
rs11466688
1.00[CHD][hapmap]
rs12142199
0.82[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs1240708
0.83[MEX][hapmap]
rs1268339
0.84[AMR][1000 genomes]
rs28488099
1.00[CHD][hapmap]
rs4970364
1.00[CHD][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
UBE2J2
Proximal transcriptional regulation
AGRN
Distal transcriptional regulation
B3GALT6
Distal transcriptional regulation
SDF4
Distal transcriptional regulation
UBE2J2
Distal transcriptional regulation
UBE2J2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)