SNP Report
Basic Infomation
| Name | rs11654266 dbSNP |
|---|---|
| Location | chr:17,5373956 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11658701 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11868567 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11869157 | 1.00[ASN][1000 genomes] |
| rs16954727 | 1.00[CHB][hapmap] |
| rs1805446 | 1.00[ASW][hapmap];0.91[CEU][hapmap];0.80[LWK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1805468 | 0.87[YRI][hapmap] |
| rs3859291 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8072203 | 0.83[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DHX33 | Proximal transcriptional regulation |
| NUP88 | Distal transcriptional regulation |
| RPAIN | Distal transcriptional regulation |
| DERL2 | Distal transcriptional regulation |
| MIS12 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014