SNP Report

Basic Infomation

Name	rs11598988 dbSNP
Location	chr:10,35274750
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11591574	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592037	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap]
rs11592356	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11592886	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11592925	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11594771	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11595640	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11597746	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11597912	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12765063	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12767102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12767868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12775079	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12777222	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12778629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12782377	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17499780	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583945	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17583959	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2384285	0.82[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34658029	0.83[EUR][1000 genomes]
rs35356037	0.83[AMR][1000 genomes]
rs35807819	0.83[AMR][1000 genomes]
rs60648958	0.83[AMR][1000 genomes]
rs61161332	0.83[AMR][1000 genomes]
rs67406033	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72789691	0.83[AMR][1000 genomes]
rs877779	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PARD3	Distal transcriptional regulation
PARD3-AS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)