SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11574099	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11574103	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11574114	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11574139	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2853563	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3858733	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55748765	0.87[EUR][1000 genomes]
rs58789572	0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Proximal transcriptional regulation
SLC48A1	Distal transcriptional regulation
VDR	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)