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rVarBase
SNP Report
Basic Infomation
Name
rs1152240  
dbSNP
Location
chr:11,63070493
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1193719
1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1193720
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1193872
0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1193901
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1404609
1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1939764
1.00[LWK][hapmap]
rs3019069
0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483775
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC22A10
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
BCHE
seeQTL