SNP Report
Basic Infomation
| Name | rs11231898 dbSNP |
|---|---|
| Location | chr:11,64658836 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231909 | 1.00[AMR][1000 genomes] |
| rs11231910 | 1.00[AMR][1000 genomes] |
| rs11231914 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11231922 | 1.00[AMR][1000 genomes] |
| rs11231924 | 1.00[AMR][1000 genomes] |
| rs12270141 | 1.00[AMR][1000 genomes] |
| rs12272785 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12274449 | 0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12277345 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12281031 | 1.00[AMR][1000 genomes] |
| rs12290575 | 1.00[AMR][1000 genomes] |
| rs61741398 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61746812 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7111659 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EHD1 | Proximal transcriptional regulation |
| ENSG00000203400 | Proximal transcriptional regulation |
| MIR192 | Proximal transcriptional regulation |
| ENSG00000267804 | Proximal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| MIR194-2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014