SNP Report
Basic Infomation
| Name | rs11231074 dbSNP |
|---|---|
| Location | chr:11,62161714 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1043785 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1043789 | 0.91[ASN][1000 genomes] |
| rs10897269 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11231044 | 0.81[ASN][1000 genomes] |
| rs11231055 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11231067 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11231068 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11231070 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11231071 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11231072 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11231073 | 0.94[ASN][1000 genomes] |
| rs11231075 | 0.92[ASN][1000 genomes] |
| rs11231076 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11820258 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11824690 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12282077 | 0.87[ASN][1000 genomes] |
| rs12292642 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12419894 | 0.81[ASN][1000 genomes] |
| rs2155996 | 0.83[ASN][1000 genomes] |
| rs2302359 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2302361 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34075806 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34114318 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34853836 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34950346 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs34956831 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35105438 | 0.84[ASN][1000 genomes] |
| rs35341808 | 0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35499940 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4281490 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4432028 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs67149710 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7109277 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7116792 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73494068 | 0.87[ASN][1000 genomes] |
| rs7929433 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7936165 | 0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255126 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| C11orf48 | Distal transcriptional regulation |
| C11orf83 | Distal transcriptional regulation |
| BSCL2 | Distal transcriptional regulation |
| ENSG00000255432 | Distal transcriptional regulation |
| METTL12 | Distal transcriptional regulation |
| SNORA57 | Distal transcriptional regulation |
| ASRGL1 | Distal transcriptional regulation |
| B3GAT3 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| ENSG00000257058 | Distal transcriptional regulation |
| UBXN1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014