SNP Report
Basic Infomation
| Name | rs11227153 dbSNP |
|---|---|
| Location | chr:11,64974442 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10895992 | 0.84[EUR][1000 genomes] |
| rs10895993 | 0.84[EUR][1000 genomes] |
| rs11227147 | 0.80[JPT][hapmap] |
| rs11227154 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12224555 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12279142 | 0.80[CHB][hapmap] |
| rs12789598 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2271446 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2271449 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34888828 | 0.95[EUR][1000 genomes] |
| rs4492832 | 0.89[CHB][hapmap];0.82[JPT][hapmap] |
| rs4930285 | 0.81[EUR][1000 genomes] |
| rs4930703 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs542380 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
| rs7116156 | 0.80[JPT][hapmap] |
| rs872805 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAPN1 | Proximal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CAPN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FAU | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014