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rVarBase
SNP Report
Basic Infomation
Name
rs11079379  
dbSNP
Location
chr:17,57507122
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12600858
1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1971658
0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59376051
0.80[ASN][1000 genomes]
rs758382
0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs8065573
0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075971
0.90[CHB][hapmap];0.80[CHD][hapmap]
rs9896769
0.86[CHB][hapmap]
rs9903442
0.80[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
YPEL2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
RNF43
SCAN