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rVarBase
SNP Report
Basic Infomation
Name
rs11006127  
dbSNP
Location
chr:10,60143021
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10826176
0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[ASN][1000 genomes]
rs16912188
0.93[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs16912196
0.94[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs16912197
0.92[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs16912201
0.94[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs16912202
0.94[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs17847532
0.93[ASN][1000 genomes]
rs7089827
0.93[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
TFAM
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
TFAM
seeQTL
TFAM
Pritchard
TFAM
Pritchard