SNP Report
Basic Infomation
| Name | rs10826176 dbSNP |
|---|---|
| Location | chr:10,60141537 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10826177 | 0.87[TSI][hapmap] |
| rs11006127 | 0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[ASN][1000 genomes] |
| rs16912188 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs16912196 | 0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs16912197 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs16912201 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs16912202 | 0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs17847532 | 0.95[ASN][1000 genomes] |
| rs7089827 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TFAM | Proximal transcriptional regulation |
| UBE2D1 | Distal transcriptional regulation |
| TFAM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014