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rVarBase
SNP Report
Basic Infomation
Name
rs10783222  
dbSNP
Location
chr:12,48341619
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10783223
0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168325
0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168327
0.85[YRI][hapmap]
rs4073726
0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4340112
1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4459375
0.85[EUR][1000 genomes]
rs7970376
0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
VDR
Proximal transcriptional regulation
VDR
Distal transcriptional regulation
TMEM106C
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)