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rVarBase
SNP Report
Basic Infomation
Name
rs10758669  
dbSNP
Location
chr:9,4981602
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1887428
0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36051895
0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
JAK2
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
eQTL related gene
Source
hCG_1988300
SCAN
CDK2
SCAN
LOC647954
SCAN
NPHS1
SCAN
ZNF542
SCAN
KRT8P15
SCAN
PIP5K1C
SCAN
LSM12
SCAN
MED13
SCAN
LOC100128116
SCAN
IRF2BP1
SCAN
C16orf70
SCAN
CITED4
SCAN