SNP Report
Basic Infomation
| Name | rs1050567 dbSNP |
|---|---|
| Location | chr:2,61705663 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1467354 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17007967 | 0.84[JPT][hapmap] |
| rs2100123 | 0.82[EUR][1000 genomes] |
| rs2166720 | 1.00[ASW][hapmap] |
| rs57444330 | 0.80[ASN][1000 genomes] |
| rs6711692 | 0.81[EUR][1000 genomes] |
| rs6735309 | 0.86[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72815560 | 0.86[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72815573 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72815581 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72815582 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7559099 | 0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap] |
| rs778754 | 0.82[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| XPO1 | Proximal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
| XPO1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SPEF2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014