SNP Report
Basic Infomation
| Name | rs10207939 dbSNP |
|---|---|
| Location | chr:2,61253415 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10172306 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10177855 | 0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10180557 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10182774 | 1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10194826 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10195800 | 1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs10211029 | 1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs12713431 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12713433 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.87[ASN][1000 genomes] |
| rs13412375 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13413699 | 0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17539290 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17539345 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2564114 | 1.00[CHB][hapmap];0.89[CHD][hapmap] |
| rs2698193 | 1.00[CHB][hapmap];0.89[CHD][hapmap] |
| rs4643526 | 1.00[JPT][hapmap] |
| rs6727926 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs68180594 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72809443 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7586478 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9309333 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| PEX13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014