SNP Report
Basic Infomation
| Name | rs10180557 dbSNP |
|---|---|
| Location | chr:2,61294746 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10172306 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10175122 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10177855 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10194826 | 0.83[ASN][1000 genomes] |
| rs10207939 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12713431 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12713433 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13412375 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13413699 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17539290 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17539345 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6709410 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6727926 | 0.83[EUR][1000 genomes] |
| rs68180594 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs71420385 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72809443 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7586478 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9309333 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014