SNP Report
Name | rs10180557   dbSNP |
---|---|
Location | chr:2,61294746 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10172306 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10175122 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10177855 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10194826 | 0.83[ASN][1000 genomes] |
rs10207939 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12713431 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12713433 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs13412375 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13413699 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17539290 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17539345 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6709410 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6727926 | 0.83[EUR][1000 genomes] |
rs68180594 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs71420385 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs72809443 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7586478 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9309333 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
KIAA1841 | Proximal transcriptional regulation |
AHSA2 | Distal transcriptional regulation |
PUS10 | Distal transcriptional regulation |
PEX13 | Distal transcriptional regulation |
KIAA1841 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014