SNP Report
Basic Infomation
| Name | rs10161320 dbSNP |
|---|---|
| Location | chr:12,48495700 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168384 | 1.00[AMR][1000 genomes] |
| rs11168385 | 1.00[AMR][1000 genomes] |
| rs11168405 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168457 | 1.00[AMR][1000 genomes] |
| rs12303042 | 1.00[AMR][1000 genomes] |
| rs12303151 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12303317 | 1.00[AMR][1000 genomes] |
| rs12303908 | 1.00[AMR][1000 genomes] |
| rs12304251 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12306869 | 1.00[AMR][1000 genomes] |
| rs12310743 | 1.00[AMR][1000 genomes] |
| rs12322803 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73301128 | 1.00[AMR][1000 genomes] |
| rs73301161 | 1.00[AMR][1000 genomes] |
| rs73301164 | 1.00[AMR][1000 genomes] |
| rs7358642 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| PFKM | Proximal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| SENP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014