SNP Report

Basic Infomation

Name	rs9554577 dbSNP
Location	chr:13,99900707
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11069358	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11618948	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11620194	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232061	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12429568	0.83[EUR][1000 genomes]
rs12857217	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12864099	0.82[AMR][1000 genomes]
rs12864373	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12869170	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12877371	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12877480	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1923894	0.90[ASN][1000 genomes]
rs1927729	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181718	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34647286	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35407628	0.80[AMR][1000 genomes]
rs35694871	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35715041	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742130	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630393	0.90[ASN][1000 genomes]
rs7332472	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997823	0.90[ASN][1000 genomes]
rs7998034	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8181880	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9300537	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9300538	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9300539	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9554557	0.80[AMR][1000 genomes]
rs9554576	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9557168	0.80[AMR][1000 genomes]
rs9557176	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9557178	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9557189	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557190	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557192	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557193	0.97[ASN][1000 genomes]
rs9557194	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557195	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9557202	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9557205	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9557207	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9582290	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9585006	0.80[AMR][1000 genomes]
rs9585030	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9585032	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9585037	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9585038	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9805153	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9805233	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
UBAC2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)