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rVarBase
SNP Report
Basic Infomation
Name
rs9358389  
dbSNP
Location
chr:6,21096623
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12055489
0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2446490
0.88[ASN][1000 genomes]
rs4438948
0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62404503
0.93[ASN][1000 genomes]
rs6937439
0.90[ASN][1000 genomes]
rs7771907
0.90[ASN][1000 genomes]
rs9295494
0.86[ASN][1000 genomes]
rs9350322
0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9356763
0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9465969
0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)