SNP Report
Basic Infomation
| Name | rs9329408 dbSNP |
|---|---|
| Location | chr:1,1131316 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10907175 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10907176 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12060374 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12060422 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12061357 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12062042 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12062271 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12063663 | 0.84[EUR][1000 genomes] |
| rs12063897 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12064046 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12065129 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12066103 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12067297 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28460227 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28648687 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4081333 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6694487 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9659213 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9659458 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TTLL10 | Distal transcriptional regulation |
| TNFRSF18 | Distal transcriptional regulation |
| TTLL10 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014