SNP Report
Basic Infomation
| Name | rs875023 dbSNP |
|---|---|
| Location | chr:12,48194435 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168244 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11168245 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11168250 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11168251 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11168252 | 1.00[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs55726902 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs56389811 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7135791 | 1.00[LWK][hapmap] |
| rs73107980 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73107993 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HDAC7 | Proximal transcriptional regulation |
| ENSG00000268069 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| HDAC7 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014