SNP Report

Basic Infomation

Name	rs8005161 dbSNP
Location	chr:14,88472595
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10129418	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10138763	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10220572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11159833	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11624293	0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12434101	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561758	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17123957	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2008686	0.80[ASN][1000 genomes]
rs2289511	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs28533072	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28587714	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28667727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365448	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs366615	0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs367636	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs368159	0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs3742704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378816	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs380557	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs381069	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3850378	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs398076	0.83[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs398607	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs405567	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs412915	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs413420	0.80[YRI][hapmap]
rs415076	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs429176	0.94[JPT][hapmap]
rs4462528	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs452307	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs55808324	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59647005	0.89[ASN][1000 genomes]
rs60617687	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7140285	0.84[EUR][1000 genomes]
rs73312821	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73312867	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73314714	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73314736	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73314746	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8006352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8007233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8014798	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
GALC	Distal transcriptional regulation
GPR65	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)