SNP Report
Name | rs8005161   dbSNP |
---|---|
Location | chr:14,88472595 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10129418 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10138763 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10220572 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11159833 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11624293 | 0.92[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12434101 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1561758 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs17123957 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
rs2008686 | 0.80[ASN][1000 genomes] |
rs2289511 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs28533072 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs28587714 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs28667727 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs365448 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs366615 | 0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap] |
rs367636 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
rs368159 | 0.89[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap] |
rs3742704 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs378816 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs380557 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
rs381069 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
rs3850378 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs398076 | 0.83[ASW][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap] |
rs398607 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs405567 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs412915 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs413420 | 0.80[YRI][hapmap] |
rs415076 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs429176 | 0.94[JPT][hapmap] |
rs4462528 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs452307 | 0.89[CHB][hapmap];1.00[JPT][hapmap] |
rs55808324 | 0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs59647005 | 0.89[ASN][1000 genomes] |
rs60617687 | 0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7140285 | 0.84[EUR][1000 genomes] |
rs73312821 | 0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73312867 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs73314714 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs73314736 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73314746 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs8006352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs8007233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs8014798 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
GALC | Distal transcriptional regulation |
GPR65 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ELK1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014