SNP Report
Basic Infomation
| Name | rs7967822 dbSNP |
|---|---|
| Location | chr:12,40443125 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10454013 | 0.92[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs10506141 | 0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10877929 | 0.92[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10878029 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174735 | 0.83[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11174918 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11174998 | 0.91[ASN][1000 genomes] |
| rs11175021 | 0.91[ASN][1000 genomes] |
| rs11175027 | 0.83[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs11175090 | 0.86[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11175094 | 0.91[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11175106 | 0.83[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11175409 | 0.80[ASN][1000 genomes] |
| rs11564279 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12228213 | 0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1542594 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1871895 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2101144 | 0.90[ASN][1000 genomes] |
| rs2128276 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2200085 | 0.85[JPT][hapmap] |
| rs2242367 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2708445 | 0.89[ASN][1000 genomes] |
| rs28370645 | 0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs28370647 | 0.92[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs28370666 | 0.92[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7135815 | 0.92[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs7966741 | 0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs7967369 | 0.83[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014