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rVarBase
SNP Report
Basic Infomation
Name
rs7954041  
dbSNP
Location
chr:12,49271997
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10783288
0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875884
1.00[ASN][1000 genomes]
rs2453475
0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453477
1.00[ASN][1000 genomes]
rs2926800
0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58829932
1.00[ASN][1000 genomes]
rs833474
0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs833477
0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833480
0.87[AFR][1000 genomes]
rs872313
0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RND1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)