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rVarBase
SNP Report
Basic Infomation
Name
rs7928792  
dbSNP
Location
chr:11,61698488
Allele
C/G
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10128548
0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2736602
0.91[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4963275
0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7120114
0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947322
0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs882169
0.86[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
FEN1
Distal transcriptional regulation
FADS2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
eQTL related gene
Source
TMEM39A
SCAN
RAB3IL1
SCAN
MTA2
SCAN
NRXN2
SCAN
MS4A15
SCAN