SNP Report
Basic Infomation
| Name | rs7901689 dbSNP |
|---|---|
| Location | chr:10,81838091 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12266626 | 1.00[EUR][1000 genomes] |
| rs12268737 | 1.00[EUR][1000 genomes] |
| rs58312966 | 1.00[EUR][1000 genomes] |
| rs60949352 | 1.00[EUR][1000 genomes] |
| rs61748824 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7072381 | 1.00[EUR][1000 genomes] |
| rs7076962 | 1.00[EUR][1000 genomes] |
| rs7081984 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7099421 | 1.00[EUR][1000 genomes] |
| rs74143256 | 1.00[EUR][1000 genomes] |
| rs74143264 | 1.00[EUR][1000 genomes] |
| rs7910753 | 1.00[EUR][1000 genomes] |
| rs7912129 | 1.00[EUR][1000 genomes] |
| rs7917124 | 1.00[EUR][1000 genomes] |
| rs7919030 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM254 | Proximal transcriptional regulation |
| PLAC9 | Distal transcriptional regulation |
| VDAC1 | Distal transcriptional regulation |
| TMEM254 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014