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rVarBase
SNP Report
Basic Infomation
Name
rs7579737
dbSNP
Location
chr:2,102987361
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10169192
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs11465700
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs11886793
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs4851010
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs4851593
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs6543138
0.82[JPT][hapmap]
rs6543144
0.80[CEU][hapmap];0.82[JPT][hapmap]
rs6736135
0.82[JPT][hapmap]
rs6748390
0.82[JPT][hapmap]
rs7602207
0.82[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
IL18R1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
SIX5
SCAN
LIPT1
SCAN
EIF5B
SCAN
MAP4K4
SCAN