SNP Report
Basic Infomation
| Name | rs7535428 dbSNP |
|---|---|
| Location | chr:1,201017602 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058000 | 1.00[ASN][1000 genomes] |
| rs10920103 | 0.83[GIH][hapmap] |
| rs12403523 | 0.83[GIH][hapmap] |
| rs13374149 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1876386 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61817966 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61817968 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61817991 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61817992 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61817993 | 0.85[EUR][1000 genomes] |
| rs61817997 | 1.00[ASN][1000 genomes] |
| rs6667021 | 0.83[LWK][hapmap] |
| rs72749161 | 1.00[ASN][1000 genomes] |
| rs7538449 | 0.93[ASW][hapmap];0.97[LWK][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014