SNP Report
Basic Infomation
| Name | rs7488942 dbSNP |
|---|---|
| Location | chr:12,48162480 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1006476 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1006477 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs58067800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59205218 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs60776348 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7135791 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7136720 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7306788 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7307367 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs73291230 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs734706 | 0.89[GIH][hapmap] |
| rs7959510 | 0.94[CEU][hapmap];0.85[GIH][hapmap] |
| rs7964310 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC48A1 | Proximal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014