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rVarBase
SNP Report
Basic Infomation
Name
rs748244  
dbSNP
Location
chr:16,11453261
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11074963
0.82[EUR][1000 genomes]
rs2903828
0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4781070
0.89[CHD][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs889650
0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SOCS1
Distal transcriptional regulation
ENSG00000238774
Distal transcriptional regulation
ENSG00000262703
Distal transcriptional regulation
RMI2
Distal transcriptional regulation
CLEC16A
Distal transcriptional regulation
ENSG00000263080
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
NUBP1
SCAN
ZC3H7A
SCAN
GSPT1
SCAN