SNP Report
Basic Infomation
| Name | rs73494188 dbSNP |
|---|---|
| Location | chr:11,63707289 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2133546 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320107 | 0.81[AFR][1000 genomes] |
| rs320122 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320125 | 1.00[AMR][1000 genomes] |
| rs320130 | 1.00[AMR][1000 genomes] |
| rs320132 | 0.91[AFR][1000 genomes] |
| rs320146 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs320152 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60588765 | 1.00[AMR][1000 genomes] |
| rs7106110 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494164 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73494180 | 1.00[AFR][1000 genomes] |
| rs7948086 | 0.91[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000256280 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| C11orf95 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| NAA40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014