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rVarBase
SNP Report
Basic Infomation
Name
rs7306680  
dbSNP
Location
chr:12,48119955
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2074533
0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2074534
0.87[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ENDOU
Proximal transcriptional regulation
SLC48A1
Distal transcriptional regulation
RPAP3
Distal transcriptional regulation
ENSG00000257433
Distal transcriptional regulation
ENDOU
Distal transcriptional regulation
HDAC7
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
KRTAP21-2
SCAN
RPAP3
SCAN
LOC100131289
SCAN