SNP Report
Basic Infomation
| Name | rs7282490 dbSNP |
|---|---|
| Location | chr:21,45615741 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11089118 | 0.80[EUR][1000 genomes] |
| rs2070551 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2070552 | 0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2838516 | 0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2838517 | 0.93[CEU][hapmap];0.82[CHB][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2838519 | 0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2838520 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2838521 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2876932 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35405602 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3746958 | 0.81[EUR][1000 genomes] |
| rs3804031 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3804032 | 0.86[EUR][1000 genomes] |
| rs4317019 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4380337 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4456788 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4635612 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7276302 | 0.93[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs743478 | 0.92[EUR][1000 genomes] |
| rs743479 | 0.93[CEU][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs762421 | 0.93[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs762422 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs762423 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8126495 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8127691 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs8134436 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232124 | Distal transcriptional regulation |
| ENSG00000232698 | Distal transcriptional regulation |
| ENSG00000267913 | Distal transcriptional regulation |
| PFKL | Distal transcriptional regulation |
| ICOSLG | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014