SNP Report
Basic Infomation
| Name | rs72771892 dbSNP |
|---|---|
| Location | chr:16,11387125 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11640467 | 0.92[AMR][1000 genomes] |
| rs11640800 | 0.92[AMR][1000 genomes] |
| rs149311 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2867945 | 0.95[AMR][1000 genomes] |
| rs35460970 | 0.90[AMR][1000 genomes] |
| rs393161 | 0.84[AMR][1000 genomes] |
| rs431918 | 0.90[AMR][1000 genomes] |
| rs56944133 | 0.90[AMR][1000 genomes] |
| rs57349119 | 0.97[AMR][1000 genomes] |
| rs57831720 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7195820 | 0.95[AMR][1000 genomes] |
| rs72771865 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72771868 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72771888 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72773814 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72773837 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72773847 | 0.92[AMR][1000 genomes] |
| rs72773848 | 0.92[AMR][1000 genomes] |
| rs72773852 | 0.87[AMR][1000 genomes] |
| rs72773859 | 0.87[AMR][1000 genomes] |
| rs72773860 | 0.87[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SOCS1 | Distal transcriptional regulation |
| ENSG00000238409 | RNA binding protein mediated regulation |
| RMI2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014