SNP Report
Basic Infomation
| Name | rs727392 dbSNP |
|---|---|
| Location | chr:14,69001801 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17105822 | 0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2428615 | 0.94[ASN][1000 genomes] |
| rs2428616 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2525502 | 0.89[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2525515 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2525516 | 0.94[ASN][1000 genomes] |
| rs2525517 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2525518 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2525519 | 0.94[ASN][1000 genomes] |
| rs2525520 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2525529 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2842332 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2842335 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2842336 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2842337 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs55670604 | 0.97[EUR][1000 genomes] |
| rs56054401 | 0.90[EUR][1000 genomes] |
| rs61985775 | 0.90[EUR][1000 genomes] |
| rs61985777 | 0.90[EUR][1000 genomes] |
| rs6573841 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs8012659 | 0.81[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014