SNP Report
Name | rs727088   dbSNP |
---|---|
Location | chr:18,67530439 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1007822 | 0.85[CEU][hapmap] |
rs11151544 | 0.92[CEU][hapmap] |
rs12969613 | 0.85[CEU][hapmap] |
rs12969657 | 1.00[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1469858 | 0.94[CHB][hapmap];0.83[ASN][1000 genomes] |
rs17207042 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1788097 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1788098 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1788100 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1788103 | 1.00[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1788105 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1788229 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1790588 | 1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1790931 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1790932 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1790963 | 0.96[CEU][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1790974 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1865761 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs34794968 | 0.83[ASN][1000 genomes] |
rs4094864 | 0.92[CEU][hapmap] |
rs4891376 | 0.81[ASN][1000 genomes] |
rs763361 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs763362 | 0.94[CHB][hapmap];0.82[ASN][1000 genomes] |
rs8099412 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9950174 | 0.96[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
CD226 | Proximal transcriptional regulation |
CD226 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014