SNP Report
Basic Infomation
| Name | rs71711924 dbSNP |
|---|---|
| Location | chr:12,40206223 |
| Allele | -/CCTG |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4238078 | 0.83[AMR][1000 genomes] |
| rs4267135 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4321021 | 1.00[AFR][1000 genomes] |
| rs4334098 | 1.00[AFR][1000 genomes] |
| rs4334099 | 1.00[AFR][1000 genomes] |
| rs4374002 | 1.00[AFR][1000 genomes] |
| rs4397917 | 1.00[AFR][1000 genomes] |
| rs4435073 | 1.00[AFR][1000 genomes] |
| rs4447240 | 1.00[AFR][1000 genomes] |
| rs4450227 | 1.00[AFR][1000 genomes] |
| rs4488272 | 1.00[AFR][1000 genomes] |
| rs4544077 | 1.00[AFR][1000 genomes] |
| rs4576894 | 1.00[AMR][1000 genomes] |
| rs4639999 | 0.83[AMR][1000 genomes] |
| rs4768178 | 1.00[AFR][1000 genomes] |
| rs4768181 | 0.83[AMR][1000 genomes] |
| rs6581337 | 1.00[AFR][1000 genomes] |
| rs6581346 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7303581 | 1.00[AFR][1000 genomes] |
| rs7969296 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7975209 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf40 | RNA binding protein mediated regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014