SNP Report
Basic Infomation
| Name | rs7169664 dbSNP |
|---|---|
| Location | chr:15,67505066 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11071943 | 0.80[AMR][1000 genomes] |
| rs11635391 | 0.85[CEU][hapmap] |
| rs12438251 | 0.80[AMR][1000 genomes] |
| rs12440986 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs15974 | 0.80[AMR][1000 genomes] |
| rs2289788 | 0.80[AMR][1000 genomes] |
| rs2414945 | 0.80[AMR][1000 genomes] |
| rs28418884 | 0.80[AMR][1000 genomes] |
| rs28655729 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs28693872 | 0.80[AMR][1000 genomes] |
| rs7178966 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8034421 | 0.80[AMR][1000 genomes] |
| rs8991 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AAGAB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014